HL_4V9L_061

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_061 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.4497

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V9L|1|BA|C|884
4V9L|1|BA|C|885
4V9L|1|BA|C|886
4V9L|1|BA|A|887
4V9L|1|BA|C|888
4V9L|1|BA|C|889
4V9L|1|BA|A|890
4V9L|1|BA|G|892

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S19

Chain BG

50S ribosomal protein L5