HL_4V9L_077

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAGAGC

Length

7 nucleotides

Bulged bases

4V9L|1|BA|A|1634

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_077 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3712

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V9L|1|BA|G|1630
4V9L|1|BA|A|1631
4V9L|1|BA|A|1632
4V9L|1|BA|G|1633
4V9L|1|BA|A|1634
4V9L|1|BA|G|1635
4V9L|1|BA|C|1636

Current chains

Chain BA

23S ribosomal RNA

Nearby chains