HL_4V9L_096

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_096 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1851

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9L|1|BA|C|2404
4V9L|1|BA|G|2405
4V9L|1|BA|U|2406
4V9L|1|BA|G|2407
4V9L|1|BA|U|2408
4V9L|1|BA|G|2409
4V9L|1|BA|G|2410
4V9L|1|BA|A|2411
4V9L|1|BA|A|2412
4V9L|1|BA|G|2413

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15