HL_4V9L_122

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_122 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.2076

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9L|1|CA|G|617
4V9L|1|CA|C|618
4V9L|1|CA|U|619
4V9L|1|CA|C|620
4V9L|1|CA|A|621
4V9L|1|CA|A|622
4V9L|1|CA|C|623

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CP

30S ribosomal protein S16