HL_4V9N_011

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V9N|1|AA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9N_011 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3459

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

4V9N|1|AA|C|418
4V9N|1|AA|C|419
4V9N|1|AA|U|420
4V9N|1|AA|U|421
4V9N|1|AA|C|422
4V9N|1|AA|G|423
4V9N|1|AA|G|424
4V9N|1|AA|G|425

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4