HL_4V9N_033

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V9N|1|AW|C|16, 4V9N|1|AW|G|18, 4V9N|1|AW|G|19, 4V9N|1|AW|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9N_033 not in the Motif Atlas

Homologous match to HL_5E81_211

Geometric discrepancy: 0.1337

The information below is about HL_5E81_211

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V9N|1|AW|C|13
4V9N|1|AW|A|14
4V9N|1|AW|G|15
4V9N|1|AW|C|16
4V9N|1|AW|C|17
4V9N|1|AW|U|17|||A
4V9N|1|AW|G|18
4V9N|1|AW|G|19
4V9N|1|AW|U|20
4V9N|1|AW|A|21
4V9N|1|AW|G|22

Current chains

Chain AW

P-site tRNA-fMet

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5