3D structure

PDB id
4V9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
4V9N|1|DA|C|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9N_160 not in the Motif Atlas
Geometric match to HL_7RQB_018
Geometric discrepancy: 0.0638
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4V9N|1|DA|U|566
4V9N|1|DA|A|567
4V9N|1|DA|U|568
4V9N|1|DA|U|569
4V9N|1|DA|G|570
4V9N|1|DA|A|571
4V9N|1|DA|A|572
4V9N|1|DA|G|573
4V9N|1|DA|C|574
4V9N|1|DA|A|575

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain D5
50S ribosomal protein L32
Chain DE
50S ribosomal protein L3
Chain DP
50S ribosomal protein L15
Chain DV
50S ribosomal protein L21

Coloring options:


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