HL_4V9N_195

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V9N|1|DA|G|2202|||C, 4V9N|1|DA|G|2202|||D, 4V9N|1|DA|U|2202|||F

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9N_195 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.2981

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V9N|1|DA|C|2202|||B
4V9N|1|DA|G|2202|||C
4V9N|1|DA|G|2202|||D
4V9N|1|DA|A|2202|||E
4V9N|1|DA|U|2202|||F
4V9N|1|DA|G|2202|||G

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DD

50S ribosomal protein L2

Chain DI

50S ribosomal protein L9