HL_4V9P_320

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V9P|1|GA|G|386, 4V9P|1|GA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_320 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0977

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9P|1|GA|A|382
4V9P|1|GA|C|383
4V9P|1|GA|A|384
4V9P|1|GA|C|385
4V9P|1|GA|G|386
4V9P|1|GA|U|387
4V9P|1|GA|G|388
4V9P|1|GA|G|389
4V9P|1|GA|U|390
4V9P|1|GA|A|391
4V9P|1|GA|U|392

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GX

50S ribosomal protein L28