HL_4V9Q_118

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4V9Q|1|CA|U|270|||M, 4V9Q|1|CA|U|270|||P

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_118 not in the Motif Atlas

Homologous match to HL_8VTW_008

Geometric discrepancy: 0.5869

The information below is about HL_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

4V9Q|1|CA|G|270|||K
4V9Q|1|CA|C|270|||L
4V9Q|1|CA|U|270|||M
4V9Q|1|CA|U|270|||N
4V9Q|1|CA|G|270|||O
4V9Q|1|CA|U|270|||P
4V9Q|1|CA|C|270|||Q

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CI

50S ribosomal protein L9

Chain CX

50S ribosomal protein L28