HL_4V9S_100

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V9S|1|BA|G|2764, 4V9S|1|BA|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_100 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0443

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V9S|1|BA|C|2758
4V9S|1|BA|U|2759
4V9S|1|BA|G|2760
4V9S|1|BA|A|2761
4V9S|1|BA|A|2762
4V9S|1|BA|A|2763
4V9S|1|BA|G|2764
4V9S|1|BA|C|2765
4V9S|1|BA|A|2766
4V9S|1|BA|U|2767
4V9S|1|BA|C|2768
4V9S|1|BA|U|2769
4V9S|1|BA|A|2770
4V9S|1|BA|A|2771
4V9S|1|BA|G|2772

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36

Chain BH

50S Ribosomal Protein L6

Chain BN

50S Ribosomal Protein L13