HL_4W21_008

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

4W21|1|5|A|295, 4W21|1|5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90792.1

Basepair signature

cWW-cWW-R-R-R-R

Number of instances in this motif group

4

Unit IDs

4W21|1|5|C|289
4W21|1|5|U|290
4W21|1|5|U|291
4W21|1|5|G|292
4W21|1|5|G|293
4W21|1|5|G|294
4W21|1|5|A|295
4W21|1|5|A|296
4W21|1|5|U|297
4W21|1|5|G|298

Current chains

Chain 5

28S ribosomal RNA

Nearby chains