Motif HL_90792.1 Version HL_90792.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-6 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_008 | 1VX6 | 0.4035 | 1 | A | U | 285 | U | 286 | U | 287 | G | 288 | A | 289 | G | 290 | U | 292 | U | 293 | G | 294 | cWW | cwW | ncSH | |
| 2 | HL_3U5H_008 | 3U5H | 0.1178 | 1 | 5 | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | G | 283 | A | 285 | U | 286 | G | 287 | cWW | cwW | ||
| 3 | HL_4CUV_008 | 4CUV | 0.0000 | 1 | 1 | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | G | 283 | A | 285 | U | 286 | G | 287 | cWW | cwW | ||
| 4 | HL_4W21_008 | 4W21 | 0.3273 | 1 | 5 | C | 289 | U | 290 | U | 291 | G | 292 | G | 293 | G | 294 | A | 296 | U | 297 | G | 298 | cwW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGAAUG | 2 |
| UUUGAGAUUG | 1 |
| CUUGGGAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGAAU | 3 |
| UUGAGAUU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_90792.1 | Only in the parent motif |
|---|---|---|---|
| HL_23182.2 Compare | HL_3U5H_008, HL_4CUV_008 | HL_4W21_008, HL_1VX6_008 | HL_4A1B_008, HL_1S72_013 |
| HL_87172.1 Compare | HL_1VX6_008 | HL_3U5H_008, HL_4CUV_008, HL_4W21_008 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.26 | Max 0.50
Coloring options: