HL_4W21_063

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19066.1

Basepair signature

cWW-cWW-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

4W21|1|5|G|4495
4W21|1|5|A|4496
4W21|1|5|U|4497
4W21|1|5|U|4498
4W21|1|5|G|4499
4W21|1|5|U|4500
4W21|1|5|U|4501
4W21|1|5|C|4502
4W21|1|5|A|4503
4W21|1|5|C|4504
4W21|1|5|C|4505

Current chains

Chain 5

28S ribosomal RNA

Nearby chains