Motif HL_19066.1 Version HL_19066.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | 4-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7A_012 | 3J7A | 0.2341 | 0 | A | A | 528 | U | 529 | U | 530 | U | 531 | A | 532 | A | 533 | A | 534 | A | 535 | C | 536 | C | 537 | U | 538 | cWW | ntSH | tSH | ||
| 2 | HL_4BPP_014 | 4BPP | 0.0000 | 0 | A | G | 514 | U | 515 | G | 516 | U | 517 | A | 518 | A | 519 | A | 520 | U | 521 | C | 522 | U | 523 | C | 524 | cWW | cwW | ntSH | ||
| 3 | HL_1Y0Q_008 | 1Y0Q | 0.2771 | 0 | A | G | 224 | A | 225 | G | 226 | U | 227 | A | 228 | A | 229 | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | cWW | ncwW | ntSHa | ||
| 4 | HL_4W21_063 | 4W21 | 0.5694 | 0 | 5 | G | 4495 | A | 4496 | U | 4497 | U | 4498 | G | 4499 | U | 4500 | U | 4501 | C | 4502 | A | 4503 | C | 4504 | C | 4505 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUUAAAACCU | 1 |
| GUGUAAAUCUC | 1 |
| GAGUAACGAAC | 1 |
| GAUUGUUCACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAAAACC | 1 |
| UGUAAAUCU | 1 |
| AGUAACGAA | 1 |
| AUUGUUCAC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19066.1 | Only in the parent motif |
|---|---|---|---|
| HL_55035.1 Compare | HL_3J7A_012, HL_4BPP_014, HL_1Y0Q_008 | HL_4W21_063 | HL_1VWW_063, HL_1VX2_038 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.23 | Avg 0.33 | Max 0.66
Coloring options: