HL_4W29_035

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_035 not in the Motif Atlas

Homologous match to HL_4V9K_035

Geometric discrepancy: 0.4332

The information below is about HL_4V9K_035

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4W29|1|AW|G|53
4W29|1|AW|U|54
4W29|1|AW|U|55
4W29|1|AW|C|56
4W29|1|AW|G|57
4W29|1|AW|A|58
4W29|1|AW|A|59
4W29|1|AW|U|60
4W29|1|AW|C|61

Current chains

Chain AW

tRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S ribosomal protein L1