HL_4W29_092

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4W29|1|BA|G|2250, 4W29|1|BA|G|2253, 4W29|1|BA|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_092 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3577

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|BA|C|2248
4W29|1|BA|U|2249
4W29|1|BA|G|2250
4W29|1|BA|G|2251
4W29|1|BA|G|2252
4W29|1|BA|G|2253
4W29|1|BA|C|2254
4W29|1|BA|G|2255
4W29|1|BA|G|2256

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16