HL_4W29_093

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4W29|1|BA|A|2268, 4W29|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_093 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.2469

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4W29|1|BA|C|2264
4W29|1|BA|U|2265
4W29|1|BA|A|2266
4W29|1|BA|A|2267
4W29|1|BA|A|2268
4W29|1|BA|A|2269
4W29|1|BA|G|2270
4W29|1|BA|G|2271
4W29|1|BA|U|2272
4W29|1|BA|A|2273
4W29|1|BA|A|2274
4W29|1|BA|C|2275
4W29|1|BA|G|2276

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16