HL_4W29_100

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4W29|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_100 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2404

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4W29|1|BA|U|2528
4W29|1|BA|G|2529
4W29|1|BA|A|2530
4W29|1|BA|A|2531
4W29|1|BA|G|2532
4W29|1|BA|A|2533
4W29|1|BA|A|2534
4W29|1|BA|G|2535

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Elongation factor G

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6