HL_4W29_104

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_104 not in the Motif Atlas

Homologous match to HL_7RQB_065

Geometric discrepancy: 0.2243

The information below is about HL_7RQB_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53171.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

18

Unit IDs

4W29|1|BA|C|2701
4W29|1|BA|U|2702
4W29|1|BA|C|2703
4W29|1|BA|C|2704
4W29|1|BA|A|2705
4W29|1|BA|G|2706

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17