HL_4W29_135

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4W29|1|CA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_135 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.249

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4W29|1|CA|G|1089
4W29|1|CA|U|1090
4W29|1|CA|U|1091
4W29|1|CA|A|1092
4W29|1|CA|A|1093
4W29|1|CA|G|1094
4W29|1|CA|U|1095
4W29|1|CA|C|1096

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CG

30S ribosomal protein S7