HL_4W29_197

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4W29|1|DA|A|1913, 4W29|1|DA|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_197 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2647

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4W29|1|DA|G|1910
4W29|1|DA|U|1911
4W29|1|DA|A|1912
4W29|1|DA|A|1913
4W29|1|DA|C|1914
4W29|1|DA|U|1915
4W29|1|DA|A|1916
4W29|1|DA|U|1917
4W29|1|DA|A|1918
4W29|1|DA|A|1919
4W29|1|DA|C|1920

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CX

Transfer RNA; tRNA

Chain CY

Elongation factor G