HL_4W29_211

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

4W29|1|DA|U|2555, 4W29|1|DA|C|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_211 not in the Motif Atlas

Geometric match to HL_8VM8_002

Geometric discrepancy: 0.3918

The information below is about HL_8VM8_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

4W29|1|DA|C|2551
4W29|1|DA|U|2552
4W29|1|DA|G|2553
4W29|1|DA|U|2554
4W29|1|DA|U|2555
4W29|1|DA|C|2556
4W29|1|DA|G|2557

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA