HL_4W29_212

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_212 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.2984

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4W29|1|DA|C|2594
4W29|1|DA|G|2595
4W29|1|DA|U|2596
4W29|1|DA|G|2597
4W29|1|DA|A|2598
4W29|1|DA|G|2599

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2