HL_4W29_226

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UCAGUUGGUUAGA

Length

13 nucleotides

Bulged bases

4W29|1|CW|G|18, 4W29|1|CW|G|19, 4W29|1|CW|U|20, 4W29|1|CW|U|20|||A, 4W29|1|CW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_226 not in the Motif Atlas

Homologous match to HL_6ORD_220

Geometric discrepancy: 0.5895

The information below is about HL_6ORD_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4W29|1|CW|U|12
4W29|1|CW|C|13
4W29|1|CW|A|14
4W29|1|CW|G|15
4W29|1|CW|U|16
4W29|1|CW|U|17
4W29|1|CW|G|18
4W29|1|CW|G|19
4W29|1|CW|U|20
4W29|1|CW|U|20|||A
4W29|1|CW|A|21
4W29|1|CW|G|22
4W29|1|CW|A|23

Current chains

Chain CW

tRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S ribosomal protein L1