HL_4W2F_070

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_070 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.3392

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4W2F|1|BA|C|1138
4W2F|1|BA|G|1139
4W2F|1|BA|U|1140
4W2F|1|BA|A|1141
4W2F|1|BA|A|1142
4W2F|1|BA|U|1143
4W2F|1|BA|A|1144
4W2F|1|BA|G|1145

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S Ribosomal Protein L6