HL_4W2F_106

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4W2F|1|BA|G|2764, 4W2F|1|BA|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_106 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0389

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4W2F|1|BA|C|2758
4W2F|1|BA|U|2759
4W2F|1|BA|G|2760
4W2F|1|BA|A|2761
4W2F|1|BA|A|2762
4W2F|1|BA|A|2763
4W2F|1|BA|G|2764
4W2F|1|BA|C|2765
4W2F|1|BA|A|2766
4W2F|1|BA|U|2767
4W2F|1|BA|C|2768
4W2F|1|BA|U|2769
4W2F|1|BA|A|2770
4W2F|1|BA|A|2771
4W2F|1|BA|G|2772

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36

Chain BH

50S Ribosomal Protein L6

Chain BN

50S Ribosomal Protein L13