HL_4W2F_146
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4W2F|1|CX|C|16, 4W2F|1|CX|G|18, 4W2F|1|CX|G|19, 4W2F|1|CX|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2F_146 not in the Motif Atlas
- Homologous match to HL_5E81_211
- Geometric discrepancy: 0.154
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4W2F|1|CX|C|13
4W2F|1|CX|A|14
4W2F|1|CX|G|15
4W2F|1|CX|C|16
4W2F|1|CX|C|17
4W2F|1|CX|U|17|||A
4W2F|1|CX|G|18
4W2F|1|CX|G|19
4W2F|1|CX|U|20
4W2F|1|CX|A|21
4W2F|1|CX|G|22
Current chains
- Chain CX
- E-site tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S Ribosomal Protein L5
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