HL_4W2G_193

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4W2G|1|DA|A|1780, 4W2G|1|DA|C|1781, 4W2G|1|DA|C|1782, 4W2G|1|DA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_193 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0529

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4W2G|1|DA|U|1777
4W2G|1|DA|U|1778
4W2G|1|DA|U|1779
4W2G|1|DA|A|1780
4W2G|1|DA|C|1781
4W2G|1|DA|C|1782
4W2G|1|DA|A|1783
4W2G|1|DA|A|1784
4W2G|1|DA|A|1785
4W2G|1|DA|A|1786
4W2G|1|DA|A|1787

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DD

50S Ribosomal Protein L2

Chain DW

50S Ribosomal Protein L22