HL_4W2H_112

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4W2H|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_112 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0646

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4W2H|1|CA|G|259
4W2H|1|CA|G|260
4W2H|1|CA|U|261
4W2H|1|CA|A|262
4W2H|1|CA|A|263
4W2H|1|CA|U|264
4W2H|1|CA|G|265
4W2H|1|CA|G|266
4W2H|1|CA|C|267

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CQ

30S Ribosomal Protein S17

Chain CT

30S Ribosomal Protein S20