HL_4W2H_206

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4W2H|1|DA|G|2751, 4W2H|1|DA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_206 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0934

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4W2H|1|DA|C|2745
4W2H|1|DA|U|2746
4W2H|1|DA|G|2747
4W2H|1|DA|A|2748
4W2H|1|DA|A|2749
4W2H|1|DA|A|2750
4W2H|1|DA|G|2751
4W2H|1|DA|C|2752
4W2H|1|DA|A|2753
4W2H|1|DA|U|2754
4W2H|1|DA|C|2755
4W2H|1|DA|U|2756
4W2H|1|DA|A|2757
4W2H|1|DA|A|2758
4W2H|1|DA|G|2759

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S Ribosomal Protein L36

Chain DH

50S Ribosomal Protein L6