HL_4WF1_044

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4WF1|1|BA|G|386, 4WF1|1|BA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_044 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0611

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4WF1|1|BA|A|382
4WF1|1|BA|C|383
4WF1|1|BA|A|384
4WF1|1|BA|C|385
4WF1|1|BA|G|386
4WF1|1|BA|U|387
4WF1|1|BA|G|388
4WF1|1|BA|G|389
4WF1|1|BA|U|390
4WF1|1|BA|A|391
4WF1|1|BA|U|392

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L28