HL_4WF1_119

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4WF1|1|CA|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_119 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0842

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WF1|1|CA|G|786
4WF1|1|CA|A|787
4WF1|1|CA|U|788
4WF1|1|CA|U|789
4WF1|1|CA|A|790
4WF1|1|CA|G|791
4WF1|1|CA|A|792
4WF1|1|CA|U|793
4WF1|1|CA|A|794
4WF1|1|CA|C|795
4WF1|1|CA|C|796

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain CU

30S ribosomal protein S21

Chain DA

Large subunit ribosomal RNA; LSU rRNA