HL_4WF1_127

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4WF1|1|CA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_127 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1052

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4WF1|1|CA|G|1089
4WF1|1|CA|U|1090
4WF1|1|CA|U|1091
4WF1|1|CA|A|1092
4WF1|1|CA|A|1093
4WF1|1|CA|G|1094
4WF1|1|CA|U|1095
4WF1|1|CA|C|1096

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CG

30S ribosomal protein S7