HL_4WOI_110

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_110 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1379

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WOI|1|CA|U|158
4WOI|1|CA|G|159
4WOI|1|CA|A|160
4WOI|1|CA|A|161
4WOI|1|CA|U|162
4WOI|1|CA|C|163
4WOI|1|CA|C|164
4WOI|1|CA|A|165
4WOI|1|CA|U|166
4WOI|1|CA|A|167
4WOI|1|CA|G|168

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CX

50S ribosomal protein L28