HL_4WOI_117

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4WOI|1|CA|G|386, 4WOI|1|CA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_117 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1098

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4WOI|1|CA|A|382
4WOI|1|CA|C|383
4WOI|1|CA|A|384
4WOI|1|CA|C|385
4WOI|1|CA|G|386
4WOI|1|CA|U|387
4WOI|1|CA|G|388
4WOI|1|CA|G|389
4WOI|1|CA|U|390
4WOI|1|CA|A|391
4WOI|1|CA|U|392

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CX

50S ribosomal protein L28