HL_4WOI_197

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4WOI|1|DA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_197 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1531

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|DA|G|963
4WOI|1|DA|A|964
4WOI|1|DA|U|965
4WOI|1|DA|G|966
4WOI|1|DA|C|967
4WOI|1|DA|A|968
4WOI|1|DA|A|969
4WOI|1|DA|C|970
4WOI|1|DA|G|971
4WOI|1|DA|C|972

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DM

30S ribosomal protein S13

Chain DW

Transfer RNA; tRNA