HL_4WPO_065

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WPO|1|AA|G|2764, 4WPO|1|AA|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0528

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WPO|1|AA|C|2758
4WPO|1|AA|U|2759
4WPO|1|AA|G|2760
4WPO|1|AA|A|2761
4WPO|1|AA|A|2762
4WPO|1|AA|A|2763
4WPO|1|AA|G|2764
4WPO|1|AA|C|2765
4WPO|1|AA|A|2766
4WPO|1|AA|U|2767
4WPO|1|AA|C|2768
4WPO|1|AA|U|2769
4WPO|1|AA|A|2770
4WPO|1|AA|A|2771
4WPO|1|AA|G|2772

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AN

50S ribosomal protein L13