HL_4WPO_076

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4WPO|1|BA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_076 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.082

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4WPO|1|BA|G|259
4WPO|1|BA|G|260
4WPO|1|BA|U|261
4WPO|1|BA|A|262
4WPO|1|BA|A|263
4WPO|1|BA|U|264
4WPO|1|BA|G|265
4WPO|1|BA|G|266
4WPO|1|BA|C|267

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20