HL_4WPO_178

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WPO|1|CA|G|2751, 4WPO|1|CA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_178 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0652

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WPO|1|CA|C|2745
4WPO|1|CA|U|2746
4WPO|1|CA|G|2747
4WPO|1|CA|A|2748
4WPO|1|CA|A|2749
4WPO|1|CA|A|2750
4WPO|1|CA|G|2751
4WPO|1|CA|C|2752
4WPO|1|CA|A|2753
4WPO|1|CA|U|2754
4WPO|1|CA|C|2755
4WPO|1|CA|U|2756
4WPO|1|CA|A|2757
4WPO|1|CA|A|2758
4WPO|1|CA|G|2759

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6