HL_4WQ1_036

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

4WQ1|1|14|U|161, 4WQ1|1|14|U|162

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_036 not in the Motif Atlas

Geometric match to HL_5VOE_001

Geometric discrepancy: 0.3784

The information below is about HL_5VOE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20535.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4WQ1|1|14|C|153
4WQ1|1|14|G|154
4WQ1|1|14|C|155
4WQ1|1|14|U|161
4WQ1|1|14|U|162
4WQ1|1|14|G|171
4WQ1|1|14|C|172
4WQ1|1|14|G|173

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain F5

50S ribosomal protein L28