HL_4WQ1_204

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WQ1|1|1H|G|2751, 4WQ1|1|1H|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_204 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0802

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WQ1|1|1H|C|2745
4WQ1|1|1H|U|2746
4WQ1|1|1H|G|2747
4WQ1|1|1H|A|2748
4WQ1|1|1H|A|2749
4WQ1|1|1H|A|2750
4WQ1|1|1H|G|2751
4WQ1|1|1H|C|2752
4WQ1|1|1H|A|2753
4WQ1|1|1H|U|2754
4WQ1|1|1H|C|2755
4WQ1|1|1H|U|2756
4WQ1|1|1H|A|2757
4WQ1|1|1H|A|2758
4WQ1|1|1H|G|2759

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13