HL_4WQR_202

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WQR|1|1H|G|2751, 4WQR|1|1H|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_202 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0788

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WQR|1|1H|C|2745
4WQR|1|1H|U|2746
4WQR|1|1H|G|2747
4WQR|1|1H|A|2748
4WQR|1|1H|A|2749
4WQR|1|1H|A|2750
4WQR|1|1H|G|2751
4WQR|1|1H|C|2752
4WQR|1|1H|A|2753
4WQR|1|1H|U|2754
4WQR|1|1H|C|2755
4WQR|1|1H|U|2756
4WQR|1|1H|A|2757
4WQR|1|1H|A|2758
4WQR|1|1H|G|2759

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13