HL_4WQU_017

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4WQU|1|AA|C|597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_017 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0506

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4WQU|1|AA|U|589
4WQU|1|AA|A|590
4WQU|1|AA|U|591
4WQU|1|AA|U|592
4WQU|1|AA|G|593
4WQU|1|AA|A|594
4WQU|1|AA|A|595
4WQU|1|AA|G|596
4WQU|1|AA|C|597
4WQU|1|AA|A|598

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AP

50S ribosomal protein L15

Chain AV

50S ribosomal protein L21