HL_4WQU_065

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WQU|1|AA|G|2764, 4WQU|1|AA|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0477

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WQU|1|AA|C|2758
4WQU|1|AA|U|2759
4WQU|1|AA|G|2760
4WQU|1|AA|A|2761
4WQU|1|AA|A|2762
4WQU|1|AA|A|2763
4WQU|1|AA|G|2764
4WQU|1|AA|C|2765
4WQU|1|AA|A|2766
4WQU|1|AA|U|2767
4WQU|1|AA|C|2768
4WQU|1|AA|U|2769
4WQU|1|AA|A|2770
4WQU|1|AA|A|2771
4WQU|1|AA|G|2772

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6