HL_4WQU_175

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WQU|1|CA|G|2751, 4WQU|1|CA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_175 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.095

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WQU|1|CA|C|2745
4WQU|1|CA|U|2746
4WQU|1|CA|G|2747
4WQU|1|CA|A|2748
4WQU|1|CA|A|2749
4WQU|1|CA|A|2750
4WQU|1|CA|G|2751
4WQU|1|CA|C|2752
4WQU|1|CA|A|2753
4WQU|1|CA|U|2754
4WQU|1|CA|C|2755
4WQU|1|CA|U|2756
4WQU|1|CA|A|2757
4WQU|1|CA|A|2758
4WQU|1|CA|G|2759

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6

Chain CN

50S ribosomal protein L13