HL_4WR6_133

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WR6_133 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.2377

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4WR6|1|1G|C|1314||||P_1
4WR6|1|1G|U|1315||||P_1
4WR6|1|1G|G|1316||||P_1
4WR6|1|1G|C|1317||||P_1
4WR6|1|1G|A|1318||||P_1
4WR6|1|1G|A|1319||||P_1
4WR6|1|1G|C|1320||||P_1
4WR6|1|1G|C|1321||||P_1
4WR6|1|1G|C|1322||||P_1
4WR6|1|1G|G|1323||||P_1

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 4A

30S ribosomal protein S13

Chain 5A

30S ribosomal protein S14

Chain AA

30S ribosomal protein S19