HL_4WR6_238

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGGGACGGAAAUCCG

Length

15 nucleotides

Bulged bases

4WR6|1|14|G|2308||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WR6_238 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3952

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4WR6|1|14|C|2301||||P_1
4WR6|1|14|G|2302||||P_1
4WR6|1|14|G|2303||||P_1
4WR6|1|14|G|2304||||P_1
4WR6|1|14|A|2305||||P_1
4WR6|1|14|C|2306||||P_1
4WR6|1|14|G|2307||||P_1
4WR6|1|14|G|2308||||P_1
4WR6|1|14|A|2309||||P_1
4WR6|1|14|A|2310||||P_1
4WR6|1|14|A|2311||||P_1
4WR6|1|14|U|2312||||P_1
4WR6|1|14|C|2313||||P_1
4WR6|1|14|C|2314||||P_1
4WR6|1|14|G|2315||||P_1

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 2L

Transfer RNA; tRNA

Chain 49

50S ribosomal protein L5