HL_4WSD_119
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_119 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.1565
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
4WSD|1|1G|C|689
4WSD|1|1G|G|690
4WSD|1|1G|G|691
4WSD|1|1G|U|692
4WSD|1|1G|G|693
4WSD|1|1G|A|694
4WSD|1|1G|A|695
4WSD|1|1G|A|696
4WSD|1|1G|U|697
4WSD|1|1G|G|698
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2A
- 30S ribosomal protein S11
- Chain 3L
- Transfer RNA; tRNA
- Chain 4L
- mRNA
- Chain 62
- 30S ribosomal protein S7
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