3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GAAGCAACGC
Length
10 nucleotides
Bulged bases
4WSD|1|1G|G|971
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_125 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.092
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4WSD|1|1G|G|963
4WSD|1|1G|A|964
4WSD|1|1G|A|965
4WSD|1|1G|G|966
4WSD|1|1G|C|967
4WSD|1|1G|A|968
4WSD|1|1G|A|969
4WSD|1|1G|C|970
4WSD|1|1G|G|971
4WSD|1|1G|C|972

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 1L
Transfer RNA; tRNA
Chain 2L
Transfer RNA; tRNA
Chain 4A
30S ribosomal protein S13
Chain 5A
30S ribosomal protein S14 type Z
Chain 82
30S ribosomal protein S9

Coloring options:


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